iSwathX: an interactive web-based application for extension of DIA peptide reference libraries | Zendy

Zainab Noor | Zendy; Jemma Wu | Zendy; Dana Pascovici | Zendy; Abidali Mohamedali | Zendy; Mark P. Molloy | Zendy; Mark S. Baker | Zendy; Shoba Ranganathan | Zendy

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iSwathX: an interactive web-based application for extension of DIA peptide reference libraries

Author(s) -

Zainab Noor,

Jemma Wu,

Dana Pascovici,

Abidali Mohamedali,

Mark P. Molloy,

Mark S. Baker,

Shoba Ranganathan

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty660

Subject(s) - extension (predicate logic) , computer science , world wide web , information retrieval , web site , the internet , programming language

Large-scale peptide mass spectrometry (MS)/MS reference libraries are essential for the comprehensive analysis of data-independent acquisition (DIA) MS datasets, providing a comprehensive set of spectra for identification and quantification of proteins. We have developed a novel web-based R-package (iSwathX) for combining reference libraries that is compatible with different DIA analysis software. This open-source web GUI automates the process of normalization and combination of spectral libraries and provides a user-friendly method for performing library format conversions, analysis and visualizations, with no need for programing familiarity.

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