ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R | Zendy

Emmanuel Paradis | Zendy; Klaus Schliep | Zendy

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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Author(s) -

Emmanuel Paradis,

Klaus Schliep

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty633

Subject(s) - flexibility (engineering) , context (archaeology) , r package , software package , computer science , software , data science , big data , quality (philosophy) , biology , data mining , programming language , mathematics , statistics , paleontology , philosophy , epistemology

After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses. Efforts have been put to improve efficiency, flexibility, support for 'big data' (R's long vectors), ease of use and quality check before a new release. These changes will hopefully make ape a useful software for the study of biodiversity and evolution in a context of increasing data quantity.

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