Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations
Author(s) -
Alex Salazar,
Thomas Abeel
Publication year - 2018
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bty614
Subject(s) - genome , synteny , ptolemy's table of chords , computational biology , bacterial genome size , biology , computer science , theoretical computer science , genetics , gene , mathematics , geometry
A long-standing limitation in comparative genomic studies is the dependency on a reference genome, which hinders the spectrum of genetic diversity that can be identified across a population of organisms. This is especially true in the microbial world where genome architectures can significantly vary. There is therefore a need for computational methods that can simultaneously analyze the architectures of multiple genomes without introducing bias from a reference.
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