Computational enhancement of single-cell sequences for inferring tumor evolution
Author(s) -
Sayaka Miura,
Louise A. Huuki-Myers,
Tiffany Buturla,
Tracy Vu,
Karen Gomez,
Sudhir Kumar
Publication year - 2018
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bty571
Subject(s) - computer science , robustness (evolution) , inference , bayesian probability , algorithm , data mining , missing data , bayesian inference , source code , artificial intelligence , computational biology , machine learning , biology , gene , genetics , operating system
Tumor sequencing has entered an exciting phase with the advent of single-cell techniques that are revolutionizing the assessment of single nucleotide variation (SNV) at the highest cellular resolution. However, state-of-the-art single-cell sequencing technologies produce data with many missing bases (MBs) and incorrect base designations that lead to false-positive (FP) and false-negative (FN) detection of somatic mutations. While computational methods are available to make biological inferences in the presence of these errors, the accuracy of the imputed MBs and corrected FPs and FNs remains unknown.
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