pyseer: a comprehensive tool for microbial pangenome-wide association studies | Zendy

John A. Lees | Zendy; Marco Galardini | Zendy; Stephen D. Bentley | Zendy; Jeffrey N. Weiser | Zendy; Jukka Corander | Zendy

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pyseer: a comprehensive tool for microbial pangenome-wide association studies

Author(s) -

John A. Lees,

Marco Galardini,

Stephen D. Bentley,

Jeffrey N. Weiser,

Jukka Corander

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty539

Subject(s) - python (programming language) , genome wide association study , computer science , documentation , r package , flexibility (engineering) , genetic association , association (psychology) , data science , data mining , programming language , biology , statistics , mathematics , genetics , single nucleotide polymorphism , philosophy , epistemology , genotype , gene

Genome-wide association studies (GWAS) in microbes have different challenges to GWAS in eukaryotes. These have been addressed by a number of different methods. pyseer brings these techniques together in one package tailored to microbial GWAS, allows greater flexibility of the input data used, and adds new methods to interpret the association results.

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