htsget: a protocol for securely streaming genomic data | Zendy

Jerome Kelleher | Zendy; Mike C. Lin | Zendy; C H Albach | Zendy; Ewan Birney | Zendy; Robert M. Davies | Zendy; Marina Gourtovaia | Zendy; David Glazer | Zendy; Cristina González | Zendy; David K. Jackson | Zendy; Aaron S. Kemp | Zendy; John Marshall | Zendy; Andrew Nowak | Zendy; Alexander Senf | Zendy; Jaime M. Tovar-Corona | Zendy; Alexander Vikhorev | Zendy; Thomas Keane | Zendy; Dixie B. Baker | Zendy; Vadim Zalunin | Zendy; Angel Pizarro | Zendy; Richard Durbin | Zendy; Mark Diekhans | Zendy; Edmon Begoli | Zendy; Ilia Tulchinsky | Zendy; Heng Li | Zendy; Rishi Nag | Zendy; Stephen Keenan | Zendy; Ilkka Lappalainen | Zendy; Jim Robinson | Zendy

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htsget: a protocol for securely streaming genomic data

Author(s) -

Jerome Kelleher,

Mike C. Lin,

C H Albach,

Ewan Birney,

Robert M. Davies,

Marina Gourtovaia,

David Glazer,

Cristina González,

David K. Jackson,

Aaron S. Kemp,

John Marshall,

Andrew Nowak,

Alexander Senf,

Jaime M. Tovar-Corona,

Alexander Vikhorev,

Thomas Keane,

Dixie B. Baker,

Vadim Zalunin,

Angel Pizarro,

Richard Durbin,

Mark Diekhans,

Edmon Begoli,

Ilia Tulchinsky,

Heng Li,

Rishi Nag,

Stephen Keenan,

Ilkka Lappalainen,

Jim Robinson

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty492

Subject(s) - computer science , protocol (science) , computer network , medicine , pathology , alternative medicine

Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data sharing. We have developed htsget, a protocol for secure, efficient and reliable access to sequencing read and variation data. We demonstrate four independent client and server implementations, and the results of a comprehensive interoperability demonstration.

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