13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA | Zendy

Alejandro A. Icazatti | Zendy; Osvaldo A. Martin | Zendy; María José Ríos Villegas | Zendy; Igal Szleifer | Zendy; Jorge A. Vila | Zendy

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13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA

Author(s) -

Alejandro A. Icazatti,

Osvaldo A. Martin,

María José Ríos Villegas,

Igal Szleifer,

Jorge A. Vila

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty470

Subject(s) - mit license , python (programming language) , computer science , rna , software , license , computational biology , open source , data mining , information retrieval , programming language , chemistry , operating system , biology , biochemistry , gene

Chemical shifts (CS) are an important source of structural information of macromolecules such as RNA. In addition to the scarce availability of CS for RNA, the observed values are prone to errors due to a wrong re-calibration or miss assignments. Different groups have dedicated their efforts to correct CS systematic errors on RNA. Despite this, there are not automated and freely available algorithms for evaluating the referencing of RNA 13 C CS before their deposition to the BMRB or re-reference already deposited CS with systematic errors.

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