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GeneSpy, a user-friendly and flexible genomic context visualizer
Author(s) -
Pierre Garcia,
Frédéric Jauffrit,
Christophe Grangeasse,
Céline BrochierArmanet
Publication year - 2018
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bty459
Subject(s) - context (archaeology) , computer science , user friendly , world wide web , programming language , software engineering , human–computer interaction , biology , paleontology
The exploration and comparison of genome organization is routinely used in the frame of genomic and phylogenomic analyses. As a consequence, in the past few years, various tools allowing visualizing genomic contexts have been developed. However, their use is often hampered by a lack of flexibility, particularly concerning associated databases input formats and figure customization. Here we present GeneSpy, a graphical user interface that allows the visualization and dynamic exploration of eukaryotic and prokaryotic annotated genomes. GeneSpy relies on user-friendly manageable local databases and allows the easy customization and production of figures in a multitude of formats.

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