ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis | Zendy

AnLiang Wang | Zendy; Xiaolong Yan | Zendy; Zhijun Wei | Zendy

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ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis

Author(s) -

AnLiang Wang,

Xiaolong Yan,

Zhijun Wei

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty313

Subject(s) - python (programming language) , mit license , computer science , documentation , source code , extensibility , software , software engineering , interoperability , operating system , open source software , open source , scalability , programming language

This note presents the design of a scalable software package named ImagePy for analysing biological images. Our contribution is concentrated on facilitating extensibility and interoperability of the software through decoupling the data model from the user interface. Especially with assistance from the Python ecosystem, this software framework makes modern computer algorithms easier to be applied in bioimage analysis.

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