Identification and function of FAR protein family genes from a transcriptome analysis of Aphelenchoides besseyi | Zendy

Dongwei Wang | Zendy; Chunling Xu | Zendy; Shanwen Ding | Zendy; Xin Huang | Zendy; Xi Cheng | Zendy; Chao Zhang | Zendy; Chun Chen | Zendy; Hui Xie | Zendy

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Identification and function of FAR protein family genes from a transcriptome analysis of Aphelenchoides besseyi

Author(s) -

Dongwei Wang,

Chunling Xu,

Shanwen Ding,

Xin Huang,

Xi Cheng,

Chao Zhang,

Chun Chen,

Hui Xie

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty209

Subject(s) - biology , transcriptome , gene , genbank , genetics , nematode , sequence database , identification (biology) , rna seq , uniprot , genome , computational biology , gene expression , botany , ecology

The rice white tip nematode (RWTN) Aphelenchoides besseyi is a migratory plant parasitic nematode that infects the aboveground parts of plants. Fatty acid- and retinoid-binding (FAR) proteins are nematode-specific proteins that are involved in many important biological processes. Genes encoding FAR proteins have been identified in many species of nematodes, which indicated that nematodes may produce more than one type of FAR protein. The main goal of this study is to find new molecular targets including new far genes that will help control RWTN, and reduce the economic damage caused by RWTN.

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