Promoter analysis and prediction in the human genome using sequence-based deep learning models
Author(s) -
Ramzan Umarov,
Hiroyuki Kuwahara,
Yu Li,
Xin Gao,
Victor Solovyev
Publication year - 2018
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bty1068
Subject(s) - promoter , discriminative model , computational biology , computer science , identification (biology) , deep learning , human genome , dna binding site , genome , artificial intelligence , biology , machine learning , gene , genetics , gene expression , botany
Computational identification of promoters is notoriously difficult as human genes often have unique promoter sequences that provide regulation of transcription and interaction with transcription initiation complex. While there are many attempts to develop computational promoter identification methods, we have no reliable tool to analyze long genomic sequences.
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