ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets | Zendy

Kim Wong | Zendy; José Fernández Navarro | Zendy; Ludvig Bergenstråhle | Zendy; Patrik L. Ståhl | Zendy; Joakim Lundeberg | Zendy

Open Access

ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets

Author(s) -

Kim Wong,

José Fernández Navarro,

Ludvig Bergenstråhle,

Patrik L. Ståhl,

Joakim Lundeberg

Publication year - 2018

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bty030

Subject(s) - computer science , detector , artificial intelligence , computer vision , hot spot (computer programming) , image (mathematics) , pattern recognition (psychology) , data mining , telecommunications , operating system

Spatial Transcriptomics (ST) is a method which combines high resolution tissue imaging with high troughput transcriptome sequencing data. This data must be aligned with the images for correct visualization, a process that involves several manual steps.

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