Curatr: a web application for creating, curating and sharing a mass spectral library
Author(s) -
Andrew Palmer,
Prasad Phapale,
Dominik Fay,
Theodore Alexandrov
Publication year - 2017
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btx786
Subject(s) - computer science , metadata , software , fragmentation (computing) , information retrieval , world wide web , interface (matter) , source code , database , operating system , bubble , maximum bubble pressure method
We have developed a web application curatr for the rapid generation of high quality mass spectral fragmentation libraries from liquid-chromatography mass spectrometry datasets. Curatr handles datasets from single or multiplexed standards and extracts chromatographic profiles and potential fragmentation spectra for multiple adducts. An intuitive interface helps users to select high quality spectra that are stored along with searchable molecular information, the providence of each standard and experimental metadata. Curatr supports exports to several standard formats for use with third party software or submission to repositories. We demonstrate the use of curatr to generate the EMBL Metabolomics Core Facility spectral library http://curatr.mcf.embl.de.
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