ndexr—an R package to interface with the network data exchange | Zendy

Florian Auer | Zendy; Zaynab Hammoud | Zendy; Alexandr Ishkin | Zendy; Dexter Pratt | Zendy; Trey Ideker | Zendy; Frank Krämer | Zendy

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ndexr—an R package to interface with the network data exchange

Author(s) -

Florian Auer,

Zaynab Hammoud,

Alexandr Ishkin,

Dexter Pratt,

Trey Ideker,

Frank Krämer

Publication year - 2017

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btx683

Subject(s) - computer science , bioconductor , upload , interoperability , interface (matter) , server , data exchange , software , open source , data sharing , computer network , operating system , world wide web , database , medicine , biochemistry , chemistry , alternative medicine , bubble , pathology , maximum bubble pressure method , gene

Seamless exchange of biological network data enables bioinformatic algorithms to integrate networks as prior knowledge input as well as to document resulting network output. However, the interoperability between pathway databases and various methods and platforms for analysis is currently lacking. The Network Data Exchange (NDEx) is an open-source data commons that facilitates the user-centered sharing and publication of networks of many types and formats.

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