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Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models
Author(s) -
Pedro CarmonaSáez,
Nieves Varela,
María José Luque,
Daniel ToroDomínguez,
Jordi MartorellMarugán,
Marta E. AlarcónRiquelme,
Concepción Marañón
Publication year - 2017
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btx502
Subject(s) - projection (relational algebra) , computational biology , computer science , artificial intelligence , biology , algorithm
Plasmacytoid dendritic cells (pDC) play a major role in the regulation of adaptive and innate immunity. Human pDC are difficult to isolate from peripheral blood and do not survive in culture making the study of their biology challenging. Recently, two leukemic counterparts of pDC, CAL-1 and GEN2.2, have been proposed as representative models of human pDC. Nevertheless, their relationship with pDC has been established only by means of particular functional and phenotypic similarities. With the aim of characterizing GEN2.2 and CAL-1 in the context of the main circulating immune cell populations we have performed microarray gene expression profiling of GEN2.2 and carried out an integrated analysis using publicly available gene expression datasets of CAL-1 and the main circulating primary leukocyte lineages.

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