Open AccessCOMPASS: the COMPletely Arbitrary Sequence Simulator
Author(s) -
Andrew Low,
Nicolas Rodrigue,
Alex Wong
Publication year - 2017
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btx347
Subject(s) - compass , sequence (biology) , computer science , computer graphics (images) , simulation , software , programming language , cartography , geography , biology , genetics
Simulated sequence alignments are frequently used to test bioinformatics tools, but current sequence simulators are limited to defined state spaces. Here, we present the COMPletely Arbitrary Sequence Simulator (COMPASS), which is able to simulate the evolution of absolutely any discrete state space along a tree, for any form of time-reversible model.
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