Incorporating prior information into differential network analysis using non-paranormal graphical models
Author(s) -
Xiao-Fei Zhang,
Le Ou-Yang,
Hong Yan
Publication year - 2017
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btx208
Subject(s) - computer science , graphical model , differential (mechanical device) , data mining , gene regulatory network , gaussian , regulator , theoretical computer science , machine learning , gene , biology , biochemistry , gene expression , physics , quantum mechanics , engineering , aerospace engineering
Understanding how gene regulatory networks change under different cellular states is important for revealing insights into network dynamics. Gaussian graphical models, which assume that the data follow a joint normal distribution, have been used recently to infer differential networks. However, the distributions of the omics data are non-normal in general. Furthermore, although much biological knowledge (or prior information) has been accumulated, most existing methods ignore the valuable prior information. Therefore, new statistical methods are needed to relax the normality assumption and make full use of prior information.
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