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Ligandbook: an online repository for small and drug-like molecule force field parameters
Author(s) -
Jan Domański,
Oliver Beckstein,
Bogdan I. Iorga
Publication year - 2017
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btx037
Subject(s) - computer science , scripting language , identifier , metadata , set (abstract data type) , field (mathematics) , force field (fiction) , information retrieval , software , identification (biology) , data mining , world wide web , database , programming language , artificial intelligence , biology , botany , mathematics , pure mathematics
Ligandbook is a public database and archive for force field parameters of small and drug-like molecules. It is a repository for parameter sets that are part of published work but are not easily available to the community otherwise. Parameter sets can be downloaded and immediately used in molecular dynamics simulations. The sets of parameters are versioned with full histories and carry unique identifiers to facilitate reproducible research. Text-based search on rich metadata and chemical substructure search allow precise identification of desired compounds or functional groups. Ligandbook enables the rapid set up of reproducible molecular dynamics simulations of ligands and protein-ligand complexes.

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