T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life | Zendy

Ignazio Carbone | Zendy; James B. White | Zendy; Jolanta Miądlikowska | Zendy; A. Elizabeth Arnold | Zendy; Mark A. Miller | Zendy; Frank Kauff | Zendy; Jana M. U′Ren | Zendy; Georgiana May | Zendy; François Lutzoni | Zendy

Open Access

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

Author(s) -

Ignazio Carbone,

James B. White,

Jolanta Miądlikowska,

A. Elizabeth Arnold,

Mark A. Miller,

Frank Kauff,

Jana M. U′Ren,

Georgiana May,

François Lutzoni

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw808

Subject(s) - phylogenetic tree , metadata , phylogenetics , clade , tree (set theory) , systematics , upload , supertree , biology , computer science , taxon , context (archaeology) , evolutionary biology , information retrieval , taxonomy (biology) , world wide web , zoology , ecology , paleontology , genetics , mathematical analysis , mathematics , gene

High-quality phylogenetic placement of sequence data has the potential to greatly accelerate studies of the diversity, systematics, ecology and functional biology of diverse groups. We developed the Tree-Based Alignment Selector (T-BAS) toolkit to allow evolutionary placement and visualization of diverse DNA sequences representing unknown taxa within a robust phylogenetic context, and to permit the downloading of highly curated, single- and multi-locus alignments for specific clades.

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