Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions | Zendy

Martha Zakrzewski | Zendy; Carla Proietti | Zendy; Jonathan Ellis | Zendy; Shihab Hasan | Zendy; MarieJo Brion | Zendy; Bernard Berger | Zendy; Lutz Krause | Zendy

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Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions

Author(s) -

Martha Zakrzewski,

Carla Proietti,

Jonathan Ellis,

Shihab Hasan,

MarieJo Brion,

Bernard Berger,

Lutz Krause

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw725

Subject(s) - perl , computer science , software , java , suite , software suite , source code , interface (matter) , metagenomics , multivariate statistics , web server , world wide web , python (programming language) , web application , data mining , the internet , machine learning , operating system , biology , biochemistry , archaeology , bubble , maximum bubble pressure method , gene , history

Calypso is an easy-to-use online software suite that allows non-expert users to mine, interpret and compare taxonomic information from metagenomic or 16S rDNA datasets. Calypso has a focus on multivariate statistical approaches that can identify complex environment-microbiome associations. The software enables quantitative visualizations, statistical testing, multivariate analysis, supervised learning, factor analysis, multivariable regression, network analysis and diversity estimates. Comprehensive help pages, tutorials and videos are provided via a wiki page.

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