A Cytoscape app for motif enumeration with ISMAGS | Zendy

Thomas Van Parys | Zendy; Ine Melckenbeeck | Zendy; Maarten Houbraken | Zendy; Pieter Audenaert | Zendy; Didier Colle | Zendy; Mario Pickavet | Zendy; Piet Demeester | Zendy; Yves Van de Peer | Zendy

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A Cytoscape app for motif enumeration with ISMAGS

Author(s) -

Thomas Van Parys,

Ine Melckenbeeck,

Maarten Houbraken,

Pieter Audenaert,

Didier Colle,

Mario Pickavet,

Piet Demeester,

Yves Van de Peer

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw626

Subject(s) - enumeration , computer science , documentation , source code , motif (music) , mac os , information retrieval , java , bioinformatics , world wide web , data mining , software , programming language , biology , mathematics , combinatorics , physics , acoustics

We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis.

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