Nanocall: an open source basecaller for Oxford Nanopore sequencing data | Zendy

Matei David | Zendy; Lewis Jonathan Dursi | Zendy; Delia Yao | Zendy; Paul C. Boutros | Zendy; Jared T. Simpson | Zendy

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Nanocall: an open source basecaller for Oxford Nanopore sequencing data

Author(s) -

Matei David,

Lewis Jonathan Dursi,

Delia Yao,

Paul C. Boutros,

Jared T. Simpson

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw569

Subject(s) - minion , nanopore sequencing , computer science , dna sequencer , mit license , dna sequencing , nanopore , open source , computational biology , hybrid genome assembly , dna , biology , reference genome , genetics , operating system , software , engineering , chemical engineering

The highly portable Oxford Nanopore MinION sequencer has enabled new applications of genome sequencing directly in the field. However, the MinION currently relies on a cloud computing platform, Metrichor (metrichor.com), for translating locally generated sequencing data into basecalls.

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