Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types
Author(s) -
WeiZhong Lin,
Dong Xu
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw560
Subject(s) - antimicrobial peptides , artificial intelligence , classifier (uml) , computer science , machine learning , immune recognition , hamming distance , multi label classification , innate immune system , antimicrobial , computational biology , biology , immune system , immunology , microbiology and biotechnology , algorithm
With the rapid increase of infection resistance to antibiotics, it is urgent to find novel infection therapeutics. In recent years, antimicrobial peptides (AMPs) have been utilized as potential alternatives for infection therapeutics. AMPs are key components of the innate immune system and can protect the host from various pathogenic bacteria. Identifying AMPs and their functional types has led to many studies, and various predictors using machine learning have been developed. However, there is room for improvement; in particular, no predictor takes into account the lack of balance among different functional AMPs.
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