WebSTAR3D: a web server for RNA 3D structural alignment | Zendy

Erwin Holzhauser | Zendy; Ping Ge | Zendy; Shaojie Zhang | Zendy

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WebSTAR3D: a web server for RNA 3D structural alignment

Author(s) -

Erwin Holzhauser,

Ping Ge,

Shaojie Zhang

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw502

Subject(s) - upload , protein data bank (rcsb pdb) , computer science , web server , visualization , download , graphical user interface , interface (matter) , file format , user interface , world wide web , database , the internet , operating system , data mining , biology , biochemistry , bubble , maximum bubble pressure method

The WebSTAR3D web server is a user-friendly online interface for the alignment of RNA 3D structures. The website takes as input two files, each of which can be in either PDB or mmCIF format, containing the desired structures to align, via a PDB code or user upload. In return, the user is presented with a visualization of the aligned structures in Jmol or JSmol, along with the corresponding sequence alignment, and the option to download the nucleotide mapping of the structures and a PDB file containing the aligned, superimposed structures.

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