plasmidSPAdes: assembling plasmids from whole genome sequencing data | Zendy

Dmitry Antipov | Zendy; Nolan Hartwick | Zendy; Max W. Shen | Zendy; Mikhail Raiko | Zendy; Alla Lapidus | Zendy; Pavel A. Pevzner | Zendy

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plasmidSPAdes: assembling plasmids from whole genome sequencing data

Author(s) -

Dmitry Antipov,

Nolan Hartwick,

Max W. Shen,

Mikhail Raiko,

Alla Lapidus,

Pavel A. Pevzner

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw493

Subject(s) - plasmid , genome , biology , whole genome sequencing , genetics , gene , computational biology , benchmark (surveying) , dna sequencing , geodesy , geography

Plasmids are stably maintained extra-chromosomal genetic elements that replicate independently from the host cell's chromosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects.

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