Bayesian parameter estimation for the Wnt pathway: an infinite mixture models approach
Author(s) -
Konstantinos Koutroumpas,
Paolo Ballarini,
Irene Votsi,
Paul-Henry Cournède
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw471
Subject(s) - approximate bayesian computation , computer science , gibbs sampling , python (programming language) , markov chain monte carlo , algorithm , estimation theory , dirichlet process , mixture model , model selection , dirichlet distribution , bayesian inference , inference , bayesian probability , artificial intelligence , mathematics , mathematical analysis , boundary value problem , operating system
Likelihood-free methods, like Approximate Bayesian Computation (ABC), have been extensively used in model-based statistical inference with intractable likelihood functions. When combined with Sequential Monte Carlo (SMC) algorithms they constitute a powerful approach for parameter estimation and model selection of mathematical models of complex biological systems. A crucial step in the ABC-SMC algorithms, significantly affecting their performance, is the propagation of a set of parameter vectors through a sequence of intermediate distributions using Markov kernels.
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