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Revealing aperiodic aspects of solenoid proteins from sequence information
Author(s) -
Thomas Hrabe,
Lukasz Jaroszewski,
Adam Godzik
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw319
Subject(s) - aperiodic graph , sequence (biology) , solenoid , computer science , computational biology , programming language , theoretical computer science , biology , genetics , mathematics , combinatorics , physics , quantum mechanics
Repeat proteins, which contain multiple repeats of short sequence motifs, form a large but seldom-studied group of proteins. Methods focusing on the analysis of 3D structures of such proteins identified many subtle effects in length distribution of individual motifs that are important for their functions. However, similar analysis was yet not applied to the vast majority of repeat proteins with unknown 3D structures, mostly because of the extreme diversity of the underlying motifs and the resulting difficulty to detect those.

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