DBSI server: DNA binding site identifier
Author(s) -
Shravan Sukumar,
Xiaolei Zhu,
Spencer S. Ericksen,
Julie C. Mitchell
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw315
Subject(s) - identifier , computational biology , binding site , dna , dna binding site , computer science , web server , dna binding protein , web site , biology , genetics , world wide web , programming language , transcription factor , gene , the internet , gene expression , promoter
: Protein-nucleic acid interactions are among the most important intermolecular interactions in the regulation of cellular events. Identifying residues involved in these interactions from protein structure alone is an important challenge. Here we introduce the webserver interface to DNA Binding Site Identifier (DBSI), a powerful structure-based SVM model for the prediction and visualization of DNA binding sites on protein structures. DBSI has been shown to be a top-performing model to predict DNA binding sites on the surface of a protein or peptide and shows promise in predicting RNA binding sites.
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