Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads | Zendy

Ivan Sović | Zendy; Krešimir Križanović | Zendy; Karolj Skala | Zendy; Mile Šikić | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads

Author(s) -

Ivan Sović,

Krešimir Križanović,

Karolj Skala,

Mile Šikić

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw237

Subject(s) - minion , nanopore sequencing , nanopore , sequence assembly , computer science , benchmark (surveying) , benchmarking , contig , hybrid genome assembly , genome , dna sequencing , computational biology , data mining , biology , nanotechnology , gene , genetics , materials science , gene expression , transcriptome , geodesy , marketing , geography , business

Recent emergence of nanopore sequencing technology set a challenge for established assembly methods. In this work, we assessed how existing hybrid and non-hybrid de novo assembly methods perform on long and error prone nanopore reads.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research