AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms | Zendy

Abdelrahman Hosny | Zendy; Paola VeraLicona | Zendy; Reinhard Laubenbacher | Zendy; Thibauld Favre | Zendy

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AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms

Author(s) -

Abdelrahman Hosny,

Paola VeraLicona,

Reinhard Laubenbacher,

Thibauld Favre

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw120

Subject(s) - computer science , usable , source code , software , mit license , implementation , algorithm , workflow , interface (matter) , directory , database , operating system , software engineering , world wide web , bubble , maximum bubble pressure method

There is a growing need in bioinformatics for easy-to-use software implementations of algorithms that are usable across platforms. At the same time, reproducibility of computational results is critical and often a challenge due to source code changes over time and dependencies.

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