PhamDB: a web-based application for building Phamerator databases | Zendy

James G. Lamine | Zendy; Randall J. DeJong | Zendy; Serita M. Nelesen | Zendy

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PhamDB: a web-based application for building Phamerator databases

Author(s) -

James G. Lamine,

Randall J. DeJong,

Serita M. Nelesen

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btw106

Subject(s) - computer science , upload , database , workflow , source code , interface (matter) , software , genbank , graphical user interface , operating system , key (lock) , web server , world wide web , the internet , biochemistry , chemistry , bubble , maximum bubble pressure method , gene

PhamDB is a web application which creates databases of bacteriophage genes, grouped by gene similarity. It is backwards compatible with the existing Phamerator desktop software while providing an improved database creation workflow. Key features include a graphical user interface, validation of uploaded GenBank files, and abilities to import phages from existing databases, modify existing databases and queue multiple jobs.

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