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EPS: an empirical Bayes approach to integrating pleiotropy and tissue-specific information for prioritizing risk genes
Author(s) -
Jin Liu,
Xiang Wan,
Shuangge Ma,
Can Yang
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw081
Subject(s) - genome wide association study , pleiotropy , bayes' theorem , identification (biology) , computational biology , biology , genomics , computer science , gene , genetics , genome , artificial intelligence , genotype , phenotype , bayesian probability , single nucleotide polymorphism , botany
Researchers worldwide have generated a huge volume of genomic data, including thousands of genome-wide association studies (GWAS) and massive amounts of gene expression data from different tissues. How to perform a joint analysis of these data to gain new biological insights has become a critical step in understanding the etiology of complex diseases. Due to the polygenic architecture of complex diseases, the identification of risk genes remains challenging. Motivated by the shared risk genes found in complex diseases and tissue-specific gene expression patterns, we propose as an Empirical Bayes approach to integrating Pleiotropy and Tissue-Specific information (EPS) for prioritizing risk genes.

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