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Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method
Author(s) -
Lei Du,
Heng Huang,
Jingwen Yan,
Sungeun Kim,
Shan L. Risacher,
Mark Inlow,
Jason H. Moore,
Andrew J. Saykin,
Li Shen
Publication year - 2016
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btw033
Subject(s) - canonical correlation , correlation , computer science , lasso (programming language) , feature selection , imaging genetics , feature (linguistics) , artificial intelligence , constraint (computer aided design) , matlab , pattern recognition (psychology) , data mining , sample (material) , sample size determination , graph , machine learning , mathematics , statistics , neuroimaging , theoretical computer science , biology , linguistics , philosophy , chemistry , geometry , chromatography , neuroscience , world wide web , operating system
Structured sparse canonical correlation analysis (SCCA) models have been used to identify imaging genetic associations. These models either use group lasso or graph-guided fused lasso to conduct feature selection and feature grouping simultaneously. The group lasso based methods require prior knowledge to define the groups, which limits the capability when prior knowledge is incomplete or unavailable. The graph-guided methods overcome this drawback by using the sample correlation to define the constraint. However, they are sensitive to the sign of the sample correlation, which could introduce undesirable bias if the sign is wrongly estimated.

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