Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data | Zendy

Kelly M. Burkett | Zendy; Brad McNeney | Zendy; Jinko Graham | Zendy

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Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data

Author(s) -

Kelly M. Burkett,

Brad McNeney,

Jinko Graham

Publication year - 2016

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv763

Subject(s) - r package , computer science , documentation , markov chain monte carlo , source code , code (set theory) , snp , genotype , markov chain , data mining , monte carlo method , programming language , statistics , biology , genetics , gene , single nucleotide polymorphism , mathematics , set (abstract data type) , machine learning

: The program sampletrees is a Markov chain Monte Carlo sampler of gene genealogies conditional on either phased or unphased SNP genotype data. The companion program Rsampletrees is for pre- and post-processing of sampletrees files, including setting up the files for sampletrees and storing and plotting the output of a sampletrees run.

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