SpotCaliper: fast wavelet-based spot detection with accurate size estimation | Zendy

Zsuzsanna Püspöki | Zendy; Daniel Sage | Zendy; John Paul Ward | Zendy; Michaël Unser | Zendy

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SpotCaliper: fast wavelet-based spot detection with accurate size estimation

Author(s) -

Zsuzsanna Püspöki,

Daniel Sage,

John Paul Ward,

Michaël Unser

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv728

Subject(s) - computer science , software , plug in , wavelet , pattern recognition (psychology) , data mining , artificial intelligence , computer vision , programming language

SpotCaliper is a novel wavelet-based image-analysis software providing a fast automatic detection scheme for circular patterns (spots), combined with the precise estimation of their size. It is implemented as an ImageJ plugin with a friendly user interface. The user is allowed to edit the results by modifying the measurements (in a semi-automated way), extract data for further analysis. The fine tuning of the detections includes the possibility of adjusting or removing the original detections, as well as adding further spots.

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