INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction | Zendy

R. Gonzalo Parra | Zendy; Cristian Rohr | Zendy; Daniel Koile | Zendy; Carolina Perez-Castro | Zendy; Patricio Yankilevich | Zendy

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INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction

Author(s) -

R. Gonzalo Parra,

Cristian Rohr,

Daniel Koile,

Carolina Perez-Castro,

Patricio Yankilevich

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv726

Subject(s) - computer science , complement (music) , interface (matter) , web server , web application , genome , user interface , computational biology , database , the internet , gene , operating system , biology , genetics , bubble , maximum bubble pressure method , complementation , phenotype

INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience.

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