Realtime analysis and visualization of MinION sequencing data with npReader | Zendy

Minh Duc Cao | Zendy; Devika Ganesamoorthy | Zendy; Matthew A. Cooper | Zendy; Lachlan Coin | Zendy

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Realtime analysis and visualization of MinION sequencing data with npReader

Author(s) -

Minh Duc Cao,

Devika Ganesamoorthy,

Matthew A. Cooper,

Lachlan Coin

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv658

Subject(s) - minion , computer science , nanopore sequencing , interface (matter) , pipeline (software) , software , java , visualization , graphical user interface , sequence (biology) , data mining , operating system , dna sequencing , biology , dna , genetics , bubble , maximum bubble pressure method

The recently released Oxford Nanopore MinION sequencing platform presents many innovative features opening up potential for a range of applications not previously possible. Among these features, the ability to sequence in real-time provides a unique opportunity for many time-critical applications. While many software packages have been developed to analyze its data, there is still a lack of toolkits that support the streaming and real-time analysis of MinION sequencing data.

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