Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates
Author(s) -
Kevin He,
Yanming Li,
Ji Zhu,
Hongliang Liu,
Jeffrey E. Lee,
Christopher I. Amos,
Terry Hyslop,
Jiashun Jin,
Huazhen Lin,
Qinyi Wei,
Yi Li
Publication year - 2015
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btv517
Subject(s) - covariate , false discovery rate , boosting (machine learning) , component (thermodynamics) , gradient boosting , computer science , high dimensional , statistics , artificial intelligence , data mining , pattern recognition (psychology) , computational biology , mathematics , machine learning , biology , genetics , physics , thermodynamics , random forest , gene
Technological advances that allow routine identification of high-dimensional risk factors have led to high demand for statistical techniques that enable full utilization of these rich sources of information for genetics studies. Variable selection for censored outcome data as well as control of false discoveries (i.e. inclusion of irrelevant variables) in the presence of high-dimensional predictors present serious challenges. This article develops a computationally feasible method based on boosting and stability selection. Specifically, we modified the component-wise gradient boosting to improve the computational feasibility and introduced random permutation in stability selection for controlling false discoveries.
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