An algorithm for automated layout of process description maps drawn in SBGN | Zendy

Begüm Genç | Zendy; Uḡur Doḡrusöz | Zendy

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An algorithm for automated layout of process description maps drawn in SBGN

Author(s) -

Begüm Genç,

Uḡur Doḡrusöz

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv516

Subject(s) - computer science , heuristics , process (computing) , graph layout , algorithm , theoretical computer science , graph , data mining , programming language , graph drawing , operating system

Evolving technology has increased the focus on genomics. The combination of today's advanced techniques with decades of molecular biology research has yielded huge amounts of pathway data. A standard, named the Systems Biology Graphical Notation (SBGN), was recently introduced to allow scientists to represent biological pathways in an unambiguous, easy-to-understand and efficient manner. Although there are a number of automated layout algorithms for various types of biological networks, currently none specialize on process description (PD) maps as defined by SBGN.

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