BiopLib and BiopTools—a C programming library and toolset for manipulating protein structure | Zendy

Craig T. Porter | Zendy; Andrew C.R. Martin | Zendy

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BiopLib and BiopTools—a C programming library and toolset for manipulating protein structure

Author(s) -

Craig T. Porter,

Andrew C.R. Martin

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv482

Subject(s) - protein data bank (rcsb pdb) , computer science , programming language , file format , xml , parsing , data structure , source code , database , operating system , biology , biochemistry

We describe BiopLib, a mature C programming library for manipulating protein structure, and BiopTools, a set of command-line tools which exploit BiopLib. The library also provides a small number of functions for handling protein sequence and general purpose programming and mathematics. BiopLib transparently handles PDBML (XML) format and standard PDB files. BiopTools provides facilities ranging from renumbering atoms and residues to calculation of solvent accessibility.

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