libRoadRunner: a high performance SBML simulation and analysis library | Zendy

Endre Somogyi | Zendy; JeanMarie C. Bouteiller | Zendy; James A. Glazier | Zendy; Matthias König | Zendy; Kyle Medley | Zendy; Maciej Swat | Zendy; Herbert M. Sauro | Zendy

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libRoadRunner: a high performance SBML simulation and analysis library

Author(s) -

Endre Somogyi,

JeanMarie C. Bouteiller,

James A. Glazier,

Matthias König,

Kyle Medley,

Maciej Swat,

Herbert M. Sauro

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv363

Subject(s) - sbml , computer science , python (programming language) , programming language , compiler , markup language , software , interface (matter) , operating system , parallel computing , xml , bubble , maximum bubble pressure method

This article presents libRoadRunner, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed using Systems Biology Markup Language (SBML). SBML is the most widely used standard for representing dynamic networks, especially biochemical networks. libRoadRunner is fast enough to support large-scale problems such as tissue models, studies that require large numbers of repeated runs and interactive simulations.

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