Open AccessGuidance for RNA-seq co-expression network construction and analysis: safety in numbers
Author(s) -
Sara Ballouz,
Wim Verleyen,
Jesse Gillis
Publication year - 2015
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btv118
Subject(s) - rna seq , dna microarray , expression (computer science) , rna , computational biology , computer science , gene expression , gene , data mining , biology , genetics , transcriptome , programming language
RNA-seq co-expression analysis is in its infancy and reasonable practices remain poorly defined. We assessed a variety of RNA-seq expression data to determine factors affecting functional connectivity and topology in co-expression networks.
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