Identification of cell types from single-cell transcriptomes using a novel clustering method
Author(s) -
Chen Xu,
Zhengchang Su
Publication year - 2015
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btv088
Subject(s) - cluster analysis , computer science , transcriptome , python (programming language) , computational biology , identification (biology) , k nearest neighbors algorithm , data mining , gene , biology , artificial intelligence , genetics , gene expression , botany , operating system
The recent advance of single-cell technologies has brought new insights into complex biological phenomena. In particular, genome-wide single-cell measurements such as transcriptome sequencing enable the characterization of cellular composition as well as functional variation in homogenic cell populations. An important step in the single-cell transcriptome analysis is to group cells that belong to the same cell types based on gene expression patterns. The corresponding computational problem is to cluster a noisy high dimensional dataset with substantially fewer objects (cells) than the number of variables (genes).
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