Open AccessContext-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data
Author(s) -
Luis Tobalina,
Rafael Bargiela,
Jon Pey,
FlorianAlexander Herbst,
Iván Lores,
David Rojo,
Coral Barbas,
A Peláez,
Jesús Sánchez,
Martin von Bergen,
Jana Seifert,
Manuel Ferrer,
Francisco J. Planes
Publication year - 2015
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btv036
Subject(s) - metabolic network , metaproteomics , context (archaeology) , computational biology , metabolic pathway , flux balance analysis , computer science , biology , microbial population biology , data mining , metagenomics , biochemistry , genetics , bacteria , gene , paleontology
With the advent of meta-'omics' data, the use of metabolic networks for the functional analysis of microbial communities became possible. However, while network-based methods are widely developed for single organisms, their application to bacterial communities is currently limited.