NLR-parser: rapid annotation of plant NLR complements | Zendy

Burkhard Steuernagel | Zendy; Florian Jupe | Zendy; Kamil Witek | Zendy; Jonathan D. G. Jones | Zendy; Brande B. H. Wulff | Zendy

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NLR-parser: rapid annotation of plant NLR complements

Author(s) -

Burkhard Steuernagel,

Florian Jupe,

Kamil Witek,

Jonathan D. G. Jones,

Brande B. H. Wulff

Publication year - 2015

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btv005

Subject(s) - annotation , parsing , computer science , software , motif (music) , gene annotation , computational biology , programming language , natural language processing , artificial intelligence , gene , genome , biology , genetics , physics , acoustics

The repetitive nature of plant disease resistance genes encoding for nucleotide-binding leucine-rich repeat (NLR) proteins hampers their prediction with standard gene annotation software. Motif alignment and search tool (MAST) has previously been reported as a tool to support annotation of NLR-encoding genes. However, the decision if a motif combination represents an NLR protein was entirely manual.

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