Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data | Zendy

Koji Kyoda | Zendy; Yukako Tohsato | Zendy; Kenneth H. L. Ho | Zendy; Shuichi Onami | Zendy

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Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data

Author(s) -

Koji Kyoda,

Yukako Tohsato,

Kenneth H. L. Ho,

Shuichi Onami

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu767

Subject(s) - computer science , markup language , xml , software , visualization , readability , biological data , extensibility , programming language , schema (genetic algorithms) , data mining , information retrieval , world wide web , bioinformatics , biology

Recent progress in live-cell imaging and modeling techniques has resulted in generation of a large amount of quantitative data (from experimental measurements and computer simulations) on spatiotemporal dynamics of biological objects such as molecules, cells and organisms. Although many research groups have independently dedicated their efforts to developing software tools for visualizing and analyzing these data, these tools are often not compatible with each other because of different data formats.

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