OrthoInspector 2.0: Software and database updates | Zendy

Benjamin Linard | Zendy; Alexis Allot | Zendy; Raphaël Schneider | Zendy; Can Morel | Zendy; Raymond Ripp | Zendy; Marc B. Bigler | Zendy; Julie Thompson | Zendy; Olivier Poch | Zendy; Odile Lecompte | Zendy

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OrthoInspector 2.0: Software and database updates

Author(s) -

Benjamin Linard,

Alexis Allot,

Raphaël Schneider,

Can Morel,

Raymond Ripp,

Marc B. Bigler,

Julie Thompson,

Olivier Poch,

Odile Lecompte

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu642

Subject(s) - computer science , software deployment , software , visualization , graphical user interface , r package , database , software package , interface (matter) , data mining , software engineering , programming language , operating system , bubble , maximum bubble pressure method

We previously developed OrthoInspector, a package incorporating an original algorithm for the detection of orthology and inparalogy relations between different species. We have added new functionalities to the package. While its original algorithm was not modified, performing similar orthology predictions, we facilitated the prediction of very large databases (thousands of proteomes), refurbished its graphical interface, added new visualization tools for comparative genomics/protein family analysis and facilitated its deployment in a network environment. Finally, we have released three online databases of precomputed orthology relationships.

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