MTide: an integrated tool for the identification of miRNA–target interaction in plants | Zendy

Zhao Zhang | Zendy; Li Jiang | Zendy; Jingjing Wang | Zendy; Peizhen Gu | Zendy; Ming Chen | Zendy

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MTide: an integrated tool for the identification of miRNA–target interaction in plants

Author(s) -

Zhao Zhang,

Li Jiang,

Jingjing Wang,

Peizhen Gu,

Ming Chen

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu633

Subject(s) - microrna , identification (biology) , computational biology , computer science , scripting language , rna , scale (ratio) , biology , genetics , gene , botany , physics , quantum mechanics , operating system

Small RNA sequencing and degradome sequencing (also known as parallel analysis of RNA ends) have provided rich information on the microRNA (miRNA) and its cleaved mRNA targets on a genome-wide scale in plants, but no computational tools have been developed to effectively and conveniently deconvolute the miRNA-target interaction (MTI).

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