PyBamView: a browser-based application for viewing short read alignments | Zendy

Melissa Gymrek | Zendy

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PyBamView: a browser-based application for viewing short read alignments

Author(s) -

Melissa Gymrek

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu565

Subject(s) - mit license , computer science , python (programming language) , visualization , source code , software , graphical user interface , focus (optics) , interface (matter) , computer graphics (images) , data mining , programming language , operating system , physics , optics , bubble , maximum bubble pressure method

Current sequence alignment browsers allow visualization of large and complex next-generation sequencing datasets. However, most of these tools provide inadequate display of insertions and can be cumbersome to use on large datasets. I implemented PyBamView, a lightweight Web application for visualizing short read alignments. It provides an easy-to-use Web interface for viewing alignments across multiple samples, with a focus on accurate visualization of insertions.

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