EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes | Zendy

Erika Sallet | Zendy; Jérôme Gouzy | Zendy; Thomas Schiex | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

Author(s) -

Erika Sallet,

Jérôme Gouzy,

Thomas Schiex

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu366

Subject(s) - pipeline (software) , annotation , computer science , genome , computational biology , artificial intelligence , biology , genetics , programming language , gene

It is now easy and increasingly usual to produce oriented RNA-Seq data as a prokaryotic genome is being sequenced. However, this information is usually just used for expression quantification. EuGene-PP is a fully automated pipeline for structural annotation of prokaryotic genomes integrating protein similarities, statistical information and any oriented expression information (RNA-Seq or tiling arrays) through a variety of file formats to produce a qualitatively enriched annotation including coding regions but also (possibly antisense) non-coding genes and transcription start sites.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research